Oncogenic KRAS Rewires mRNA Stability and Translation through AGO2-Mediated Disruption of the miRNA pathway

Vollständiger Abstract

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Abstract KRAS mutations occur in over 90% of pancreatic ductal adenocarcinomas (PDACs). Despite recent advances in targeting oncogenic KRAS, tumors eventually acquire resistance. A more comprehensive understanding of the mechanisms connecting KRAS signaling to tumor progression could facilitate the development of effective therapies to improve the treatment of KRAS-driven malignancies. Here, we dissected how oncogenic KRAS reprograms post-transcriptional regulation in PDAC. Oncogenic KRAS altered AGO2 phosphorylation at tyrosine 393, expanded the miRNA–mRNA interaction network, and impaired both mRNA destabilization and translational repression. Mapping endogenous miRNA-mRNA interactions using AGO2 chimeric eCLIP combined with genome-wide measurements of mRNA stability and translational efficiency using SLAM-seq and Ribo-eCLIP revealed that miRNA targets in KRAS-mutant cells exhibited increased stability and translational efficiency, even when cognate miRNA levels were unchanged. The rewiring enriched pro-tumorigenic transcripts involved in GTPase signaling, autophagy, and metabolism, and it was accompanied by the assembly of enlarged, static processing bodies (P-bodies) in cell lines, mouse models, and patient tumors, an effect that could be reversed by inhibiting oncogenic KRAS. Expression of a phospho-mimetic AGO2 Y393E reproduced the effects of oncogenic KRAS, while a phospho-deficient AGO2 Y393A blocked them. These findings identify a mechanistically distinct post-transcriptional effector arm of KRAS signaling, link AGO2 Y393 phosphorylation to both silencing dysfunction and condensate remodeling, and reveal opportunities to target RNA regulation in PDAC.