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Landmark ctDNA Molecular Response Represents an Early Predictor of Immunotherapy Outcomes in Lung Cancer: A Clinical Validity Study

Noushin Niknafs, Lavanya Sivapalan, Archana Balan, Jaime Wehr, Gavin Pereira, Samira Hosseini-Nami, Nisha Rao, Shreshtha Jolly, Kavya Velliangiri, Iiasha Beadles, Tiffany Loftus, Bryan Chesnick, Jamie Medina, Wenming Xiao, Aliyah Pabani, Kristen A. Marrone, Qing Kay Li, Joseph C. Murray, Lorenzo Rinaldi, Nicholas C. Dracopoli, Mark Sausen, Christine L. Hann, Susan C. Scott, Josephine Feliciano, Vincent K. Lam, Benjamin Levy, Victor E. Velculescu, Julie R. Brahmer, Patrick M. Forde, Paz J. Vellanki, Valsamo Anagnostou

Clinical Cancer Research · 2026

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Abstract Purpose: Circulating tumor DNA (ctDNA) analyses are informative as an early indicator of immunotherapy response in advanced non–small cell lung cancer (NSCLC); however, the clinical value of ctDNA molecular response (mR) requires further validation. Experimental Design: As part of a prospective clinical protocol (NCT05995821), we conducted targeted error-correction sequencing of ctDNA (n = 328) and matched white blood cell (WBC) DNA (n = 109) from 109 patients with metastatic NSCLC who received anti–PD-(L)1 either as monotherapy or in combination. Following cellular origin resolution of 2,818 variants, landmark mR was defined as undetectable ctDNA within 3 to 9 weeks of treatment initiation. Results: Pre-treatment ctDNA burden, but not blood tumor mutation burden, predicted survival. Implementing a tumor-naïve WBC DNA-informed approach increased the number of evaluable cases without compromising the overall accuracy of landmark ctDNA mR. A direct comparison of single-timepoint on-therapy ctDNA assessment with ctDNA dynamics from baseline to the 3- to 9-week interval, along with an analysis of heterogeneity in mR within the 3- to 9-week window, showed that undetectable ctDNA at the landmark timepoint can effectively predict survival outcomes. A significant enrichment in landmark ctDNA mR was noted among patients with progression-free survival (PFS) ≥6 months on immunotherapy (P = 2.5e−05) or chemoimmunotherapy (P = 0.02). Patients in the landmark mR group had longer PFS (P = 1.6e−06) and overall survival (P = 2.5e−05) than those with molecular progression. Conclusions: Landmark ctDNA mR provides a real-time, accurate approach for monitoring immunotherapy clinical outcomes. Although not currently validated for regulatory use, these findings demonstrate the potential validity of ctDNA as an early endpoint of immunotherapy response.

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Autor:innen
Noushin Niknafs, Lavanya Sivapalan, Archana Balan, Jaime Wehr, Gavin Pereira, Samira Hosseini-Nami, Nisha Rao, Shreshtha Jolly, Kavya Velliangiri, Iiasha Beadles, Tiffany Loftus, Bryan Chesnick, Jamie Medina, Wenming Xiao, Aliyah Pabani, Kristen A. Marrone, Qing Kay Li, Joseph C. Murray, Lorenzo Rinaldi, Nicholas C. Dracopoli, Mark Sausen, Christine L. Hann, Susan C. Scott, Josephine Feliciano, Vincent K. Lam, Benjamin Levy, Victor E. Velculescu, Julie R. Brahmer, Patrick M. Forde, Paz J. Vellanki, Valsamo Anagnostou
Quelle
Clinical Cancer Research
Publikation
2026-01-01
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ISSN / ISBN
1078-0432, 1557-3265
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Noushin Niknafs, Lavanya Sivapalan, Archana Balan, Jaime Wehr, Gavin Pereira, Samira Hosseini-Nami, Nisha Rao, Shreshtha Jolly, Kavya Velliangiri, Iiasha Beadles, Tiffany Loftus, Bryan Chesnick, Jamie Medina, Wenming Xiao, Aliyah Pabani, Kristen A. Marrone, Qing Kay Li, Joseph C. Murray, Lorenzo Rinaldi, Nicholas C. Dracopoli, Mark Sausen, Christine L. Hann, Susan C. Scott, Josephine Feliciano, Vincent K. Lam, Benjamin Levy, Victor E. Velculescu, Julie R. Brahmer, Patrick M. Forde, Paz J. Vellanki, Valsamo Anagnostou (2026). Landmark ctDNA Molecular Response Represents an Early Predictor of Immunotherapy Outcomes in Lung Cancer: A Clinical Validity Study. Clinical Cancer Research. https://doi.org/10.1158/1078-0432.ccr-26-0656
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